Variant report

Variant	rs7579190
Chromosome Location	chr2:191481480-191481481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10171621	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10191962	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10201591	0.85[AMR][1000 genomes]
rs10201787	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16832940	1.00[EUR][1000 genomes]
rs56722217	1.00[EUR][1000 genomes]
rs60491063	1.00[EUR][1000 genomes]
rs60582710	1.00[EUR][1000 genomes]
rs6434403	1.00[EUR][1000 genomes]
rs73043470	1.00[EUR][1000 genomes]
rs73057796	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73057800	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834492	chr2:191438864-191646621	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191456600-191491800	Weak transcription	Aorta	Aorta
2	chr2:191475400-191492400	Weak transcription	Fetal Brain Male	brain
3	chr2:191476800-191482600	Weak transcription	A549	lung
4	chr2:191477000-191491400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:191478200-191482400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:191480800-191484600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:191481000-191481600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:191481000-191482800	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links