Variant report
| Variant | rs7580247 |
|---|---|
| Chromosome Location | chr2:63742440-63742441 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs55772026 | 0.81[AFR][1000 genomes] |
| rs56679885 | 1.00[AMR][1000 genomes] |
| rs57170440 | 1.00[AMR][1000 genomes] |
| rs57562367 | 1.00[AMR][1000 genomes] |
| rs58127300 | 1.00[AMR][1000 genomes] |
| rs59148046 | 1.00[AMR][1000 genomes] |
| rs61110897 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73934987 | 1.00[AMR][1000 genomes] |
| rs7574047 | 1.00[AMR][1000 genomes] |
| rs7574933 | 1.00[AMR][1000 genomes] |
| rs7586871 | 0.84[YRI][hapmap] |
| rs7596420 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3417336 | chr2:62957866-63749654 | Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv1800788 | chr2:63473443-63900292 | ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv960963 | chr2:63741610-63765229 | ZNF genes & repeats Enhancers Weak transcription Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
