Variant report

Variant	rs58127300
Chromosome Location	chr2:63875987-63875988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11895799	1.00[AMR][1000 genomes]
rs11902838	1.00[AMR][1000 genomes]
rs4493246	1.00[AMR][1000 genomes]
rs56679885	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57170440	1.00[AMR][1000 genomes]
rs57562367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57724389	1.00[AMR][1000 genomes]
rs59148046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61110897	1.00[AMR][1000 genomes]
rs6716251	1.00[AMR][1000 genomes]
rs6749163	1.00[AMR][1000 genomes]
rs6749188	1.00[AMR][1000 genomes]
rs73934987	1.00[AMR][1000 genomes]
rs73934992	1.00[AMR][1000 genomes]
rs73934995	1.00[AMR][1000 genomes]
rs73937430	1.00[AMR][1000 genomes]
rs73937432	1.00[AMR][1000 genomes]
rs7564984	1.00[AMR][1000 genomes]
rs7574047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7574933	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7596420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv963239	chr2:63846496-63877130	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63875000-63878200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:63875800-63879400	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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