Variant report

Variant	rs73937432
Chromosome Location	chr2:64099244-64099245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:64098930..64100745-chr2:64106674..64109185,2	MCF-7	breast:
2	chr2:64097542..64099812-chr2:64100980..64103347,2	MCF-7	breast:
3	chr2:64068044..64070296-chr2:64097809..64100600,2	K562	blood:
4	chr2:63839924..63841875-chr2:64097480..64100299,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11895799	1.00[AMR][1000 genomes]
rs11902838	1.00[AMR][1000 genomes]
rs4493246	1.00[AMR][1000 genomes]
rs56679885	1.00[AMR][1000 genomes]
rs57170440	1.00[AMR][1000 genomes]
rs57562367	1.00[AMR][1000 genomes]
rs57724389	1.00[AMR][1000 genomes]
rs58127300	1.00[AMR][1000 genomes]
rs59148046	1.00[AMR][1000 genomes]
rs59886198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6716251	1.00[AMR][1000 genomes]
rs6749163	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6749188	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73934987	1.00[AMR][1000 genomes]
rs73934992	1.00[AMR][1000 genomes]
rs73934995	1.00[AMR][1000 genomes]
rs73937430	1.00[AMR][1000 genomes]
rs7564984	1.00[AMR][1000 genomes]
rs7574047	1.00[AMR][1000 genomes]
rs7574933	1.00[AMR][1000 genomes]
rs7593707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7596420	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64070200-64103000	Weak transcription	Gastric	stomach
2	chr2:64077000-64100200	Weak transcription	Ovary	ovary
3	chr2:64078000-64108000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:64081800-64100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:64082200-64100200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:64082200-64110000	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:64083000-64123000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:64083000-64129200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr2:64083200-64110200	Weak transcription	Small Intestine	intestine
10	chr2:64083200-64110600	Weak transcription	Pancreas	Pancrea
11	chr2:64084600-64100000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr2:64085400-64100000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:64085400-64100600	Weak transcription	Spleen	Spleen
14	chr2:64085600-64102400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:64086600-64110000	Weak transcription	Esophagus	oesophagus
16	chr2:64086800-64100400	Weak transcription	Fetal Brain Female	brain
17	chr2:64086800-64100800	Weak transcription	Fetal Kidney	kidney
18	chr2:64086800-64102800	Weak transcription	Right Ventricle	heart
19	chr2:64087200-64099800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:64087600-64101800	Genic enhancers	Liver	Liver
21	chr2:64088000-64100000	Weak transcription	K562	blood
22	chr2:64088000-64107800	Weak transcription	Colonic Mucosa	Colon
23	chr2:64088800-64100600	Weak transcription	Fetal Stomach	stomach
24	chr2:64089000-64099800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:64089800-64101400	Weak transcription	Fetal Brain Male	brain
26	chr2:64090000-64102000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr2:64090200-64100600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr2:64090600-64100600	Weak transcription	Fetal Intestine Small	intestine
29	chr2:64090600-64102800	Weak transcription	Stomach Mucosa	stomach
30	chr2:64091400-64110000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:64091800-64107800	Weak transcription	Brain Germinal Matrix	brain
32	chr2:64092000-64099800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr2:64092000-64100000	Weak transcription	Fetal Lung	lung
34	chr2:64092000-64100000	Weak transcription	HSMMtube	muscle
35	chr2:64092000-64100000	Weak transcription	HUVEC	blood vessel
36	chr2:64092600-64099600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr2:64093000-64099800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr2:64093000-64100000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr2:64093000-64100000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr2:64093000-64100200	Weak transcription	Fetal Intestine Large	intestine
41	chr2:64093000-64100800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr2:64093000-64106400	Strong transcription	Fetal Thymus	thymus
43	chr2:64093200-64099600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr2:64093600-64099800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr2:64093800-64100000	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr2:64093800-64107600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr2:64093800-64109200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr2:64093800-64110000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr2:64094000-64100000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:64094000-64100000	Weak transcription	Fetal Muscle Trunk	muscle

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