Variant report

Variant	rs11895799
Chromosome Location	chr2:64038499-64038500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11902838	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4493246	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56353821	0.94[AFR][1000 genomes]
rs56679885	1.00[AMR][1000 genomes]
rs57170440	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57562367	1.00[AMR][1000 genomes]
rs57724389	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58127300	1.00[AMR][1000 genomes]
rs59148046	1.00[AMR][1000 genomes]
rs59886198	1.00[AMR][1000 genomes]
rs61110897	1.00[AMR][1000 genomes]
rs6716251	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6726629	0.86[AFR][1000 genomes]
rs6749163	1.00[AMR][1000 genomes]
rs6749188	1.00[AMR][1000 genomes]
rs73934987	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73934992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73934995	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73937270	0.90[AFR][1000 genomes]
rs73937430	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73937432	1.00[AMR][1000 genomes]
rs7564727	0.94[AFR][1000 genomes]
rs7564984	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7574047	1.00[AMR][1000 genomes]
rs7574933	1.00[AMR][1000 genomes]
rs7593707	1.00[AMR][1000 genomes]
rs7596420	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64029200-64045200	Weak transcription	Adipose Nuclei	Adipose
2	chr2:64031400-64043600	Weak transcription	Psoas Muscle	Psoas
3	chr2:64034600-64046400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:64037400-64038600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:64037400-64041400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:64037600-64041400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:64038200-64039000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr2:64038400-64038600	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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