Variant report

Variant	rs7564727
Chromosome Location	chr2:63951114-63951115
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11895799	0.94[AFR][1000 genomes]
rs11902838	0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs4493246	0.93[YRI][hapmap]
rs56353821	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57170440	0.88[AFR][1000 genomes]
rs57724389	0.86[AFR][1000 genomes]
rs6726629	0.86[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73934987	0.88[AFR][1000 genomes]
rs73934992	0.94[AFR][1000 genomes]
rs73934995	0.83[AFR][1000 genomes]
rs73937270	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73937430	0.81[AFR][1000 genomes]
rs7564984	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63943000-63956600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:63950400-63952000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:63950400-63952400	Enhancers	HepG2	liver
5	chr2:63950800-63951800	Enhancers	A549	lung
6	chr2:63951000-63951200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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