Variant report

Variant	rs73937270
Chromosome Location	chr2:63972449-63972450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11895799	0.90[AFR][1000 genomes]
rs11902838	0.86[AFR][1000 genomes]
rs56353821	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57170440	0.96[AFR][1000 genomes]
rs57724389	0.81[AFR][1000 genomes]
rs6726629	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73934987	0.96[AFR][1000 genomes]
rs73934992	0.90[AFR][1000 genomes]
rs73934995	0.91[AFR][1000 genomes]
rs73937430	0.90[AFR][1000 genomes]
rs7564727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7564984	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63964400-63974000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:63970000-63979600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:63970200-63980400	Weak transcription	Adipose Nuclei	Adipose
4	chr2:63970400-63982200	Weak transcription	Psoas Muscle	Psoas
5	chr2:63971000-63974000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:63971200-63973000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:63971200-63974800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:63971200-63976400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:63971200-63976600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:63971600-63972600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:63971600-63972600	Weak transcription	Pancreas	Pancrea
12	chr2:63971600-63973200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:63971800-63972800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:63972200-63972600	Weak transcription	HepG2	liver
15	chr2:63972400-63973200	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links