Variant report

Variant	rs7583765
Chromosome Location	chr2:142260155-142260156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:142259500..142260427-chr2:142322823..142323400,2	MCF-7	breast:
2	chr2:142259034..142262033-chr2:142268324..142270584,3	MCF-7	breast:
3	chr2:142259654..142261746-chr2:142265611..142267711,3	MCF-7	breast:
4	chr2:142257639..142260616-chr2:142261708..142263676,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10169644	0.84[ASN][1000 genomes]
rs10169745	0.84[ASN][1000 genomes]
rs10173806	0.84[ASN][1000 genomes]
rs10204321	0.84[ASN][1000 genomes]
rs10204413	0.84[ASN][1000 genomes]
rs10204727	0.84[ASN][1000 genomes]
rs10928105	0.84[ASN][1000 genomes]
rs12053264	0.84[ASN][1000 genomes]
rs12053266	0.82[ASN][1000 genomes]
rs12053452	0.84[ASN][1000 genomes]
rs12053570	0.84[ASN][1000 genomes]
rs12053574	0.84[ASN][1000 genomes]
rs12151429	0.85[ASN][1000 genomes]
rs12151669	0.86[ASN][1000 genomes]
rs12472514	0.84[ASN][1000 genomes]
rs12476668	0.83[EUR][1000 genomes]
rs12611851	0.84[ASN][1000 genomes]
rs12622205	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13007713	0.84[ASN][1000 genomes]
rs13013202	0.81[ASN][1000 genomes]
rs13023434	0.86[ASN][1000 genomes]
rs13418036	0.84[ASN][1000 genomes]
rs13418422	0.84[ASN][1000 genomes]
rs16846151	0.84[ASN][1000 genomes]
rs4245858	0.85[ASN][1000 genomes]
rs4271710	0.84[ASN][1000 genomes]
rs4296374	0.80[ASN][1000 genomes]
rs4327189	0.84[ASN][1000 genomes]
rs4338922	0.86[ASN][1000 genomes]
rs4340449	0.86[ASN][1000 genomes]
rs4384715	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4430882	0.84[ASN][1000 genomes]
rs4476293	0.84[ASN][1000 genomes]
rs4507040	0.82[ASN][1000 genomes]
rs4544370	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4574055	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4583399	0.83[ASN][1000 genomes]
rs4599051	0.86[ASN][1000 genomes]
rs4644970	0.84[ASN][1000 genomes]
rs4954910	0.84[ASN][1000 genomes]
rs62166338	0.84[ASN][1000 genomes]
rs62167876	0.86[ASN][1000 genomes]
rs6429887	0.84[ASN][1000 genomes]
rs6429890	0.83[ASN][1000 genomes]
rs6429891	0.81[ASN][1000 genomes]
rs6429892	0.81[ASN][1000 genomes]
rs6429894	0.81[ASN][1000 genomes]
rs6429903	0.85[EUR][1000 genomes]
rs6725282	0.84[ASN][1000 genomes]
rs6729073	0.84[ASN][1000 genomes]
rs6729618	0.83[ASN][1000 genomes]
rs6729691	0.82[ASN][1000 genomes]
rs6738081	0.84[ASN][1000 genomes]
rs68142404	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849086	0.84[ASN][1000 genomes]
rs72852491	0.83[EUR][1000 genomes]
rs7340298	0.82[ASN][1000 genomes]
rs7340384	0.82[ASN][1000 genomes]
rs7569047	0.86[ASN][1000 genomes]
rs7589997	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv459607	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583207	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv459618	chr2:142246988-142263746	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv583209	chr2:142246988-142263746	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv470491	chr2:142254119-142299923	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
10	nsv583210	chr2:142259592-142295042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142247800-142266200	Weak transcription	Brain Anterior Caudate	brain
2	chr2:142256400-142263600	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:142257800-142265800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:142258000-142265800	Weak transcription	Brain Substantia Nigra	brain
5	chr2:142258800-142260200	Enhancers	Dnd41	blood
6	chr2:142259000-142260200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:142259800-142261000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:142259800-142262600	Weak transcription	Fetal Brain Male	brain
9	chr2:142260000-142261000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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