Variant report

Variant	rs4574055
Chromosome Location	chr2:142248027-142248028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11676162	0.85[ASN][1000 genomes]
rs11681860	0.85[ASN][1000 genomes]
rs11681928	0.83[CEU][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap]
rs12053574	0.81[JPT][hapmap]
rs12467062	0.82[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs12468830	1.00[JPT][hapmap]
rs12470665	0.95[CEU][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap]
rs12476668	0.85[EUR][1000 genomes]
rs12477753	0.85[JPT][hapmap]
rs12478973	0.91[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap]
rs12615851	1.00[ASW][hapmap];0.85[TSI][hapmap]
rs12617263	1.00[LWK][hapmap];0.91[MKK][hapmap];0.81[AFR][1000 genomes]
rs12621499	0.82[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs12622205	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12997254	0.81[ASN][1000 genomes]
rs12997803	0.81[ASN][1000 genomes]
rs12997891	0.85[ASN][1000 genomes]
rs12998001	0.81[ASN][1000 genomes]
rs13023434	0.94[MEX][hapmap]
rs13030335	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13031144	0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.84[ASN][1000 genomes]
rs1483141	0.82[JPT][hapmap]
rs16846467	1.00[JPT][hapmap]
rs16846484	1.00[JPT][hapmap]
rs16846521	0.84[CHD][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap]
rs2200192	0.86[JPT][hapmap]
rs2381190	0.82[CHD][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap]
rs2890615	1.00[JPT][hapmap]
rs35398890	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4340449	0.86[MEX][hapmap]
rs4384715	0.82[ASW][hapmap];0.96[CEU][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4544370	0.91[CEU][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap];0.83[AMR][1000 genomes]
rs4599051	0.86[MEX][hapmap]
rs55742018	0.85[ASN][1000 genomes]
rs59166627	0.84[ASN][1000 genomes]
rs6429903	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6429908	0.95[JPT][hapmap]
rs6748975	0.85[ASN][1000 genomes]
rs68142404	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72852491	0.85[EUR][1000 genomes]
rs7562751	0.82[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs7583765	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7588818	0.86[CEU][hapmap];0.86[JPT][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7593962	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875234	chr2:142156180-142254119	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv875243	chr2:142219033-142259592	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv459607	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv583207	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv459618	chr2:142246988-142263746	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv583209	chr2:142246988-142263746	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142239400-142256400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:142247400-142249600	Enhancers	Brain Angular Gyrus	brain
3	chr2:142247400-142249600	Enhancers	Brain Substantia Nigra	brain
4	chr2:142247800-142249400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr2:142247800-142249600	Enhancers	Brain Hippocampus Middle	brain
6	chr2:142247800-142266200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:142248000-142249600	Enhancers	Brain Cingulate Gyrus	brain

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