Variant report

Variant	rs1483141
Chromosome Location	chr2:142287827-142287828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142260415..142263091-chr2:142286815..142289016,3	MCF-7	breast:
2	chr2:142285408..142288288-chr2:142294613..142297064,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10169644	0.91[JPT][hapmap]
rs10173806	0.91[JPT][hapmap]
rs10204321	0.91[JPT][hapmap]
rs10928105	0.91[JPT][hapmap]
rs11677666	0.81[EUR][1000 genomes]
rs11683772	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11895715	0.91[JPT][hapmap]
rs12053264	0.91[JPT][hapmap]
rs12053266	0.91[JPT][hapmap]
rs12053570	0.91[JPT][hapmap]
rs12053574	0.90[JPT][hapmap]
rs12151429	0.95[JPT][hapmap]
rs12467062	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12468830	0.82[JPT][hapmap]
rs12472514	0.89[JPT][hapmap]
rs12477753	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs12478973	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12611851	0.95[JPT][hapmap]
rs12621499	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13007713	0.87[JPT][hapmap]
rs13023434	0.95[JPT][hapmap]
rs13031144	0.82[JPT][hapmap]
rs13418036	0.91[JPT][hapmap]
rs13418422	0.95[JPT][hapmap]
rs16846151	0.91[JPT][hapmap]
rs16846484	0.83[JPT][hapmap]
rs2200192	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2890615	0.82[JPT][hapmap]
rs4271710	0.91[JPT][hapmap]
rs4327189	0.90[JPT][hapmap]
rs4340449	0.95[JPT][hapmap]
rs4384715	1.00[JPT][hapmap]
rs4430882	0.91[JPT][hapmap]
rs4476293	0.95[JPT][hapmap]
rs4507040	0.91[JPT][hapmap]
rs4544370	1.00[JPT][hapmap]
rs4574055	0.82[JPT][hapmap]
rs4583399	0.95[JPT][hapmap]
rs4599051	0.95[JPT][hapmap]
rs4644970	0.91[JPT][hapmap]
rs4954910	0.95[JPT][hapmap]
rs6429887	0.91[JPT][hapmap]
rs6429890	0.91[JPT][hapmap]
rs6725282	0.95[JPT][hapmap]
rs6729073	0.95[JPT][hapmap]
rs6738081	0.87[JPT][hapmap]
rs7562751	0.82[JPT][hapmap]
rs7589997	0.96[ASN][1000 genomes]
rs7593962	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv470491	chr2:142254119-142299923	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv583210	chr2:142259592-142295042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv459629	chr2:142263400-142295042	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv583211	chr2:142263400-142295042	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142278800-142291200	Weak transcription	Brain Anterior Caudate	brain
2	chr2:142280600-142291600	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:142284600-142291600	Weak transcription	Brain Substantia Nigra	brain
4	chr2:142287400-142291200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:142287400-142291200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:142287600-142291600	Weak transcription	GM12878-XiMat	blood

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