Variant report

Variant	rs7562751
Chromosome Location	chr2:142270419-142270420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142267758..142272921-chr2:142273064..142275767,4	MCF-7	breast:
2	chr2:142259034..142262033-chr2:142268324..142270584,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11676162	0.94[ASN][1000 genomes]
rs11677666	0.88[ASN][1000 genomes]
rs11681860	0.94[ASN][1000 genomes]
rs11681928	0.90[CHB][hapmap]
rs12467062	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs12468830	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12470072	0.90[CHB][hapmap]
rs12470665	0.86[JPT][hapmap]
rs12476668	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12477753	0.85[JPT][hapmap]
rs12478973	0.90[CEU][hapmap];0.91[JPT][hapmap]
rs12612624	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs12615851	0.80[CHB][hapmap]
rs12621499	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs12997254	0.90[ASN][1000 genomes]
rs12997803	0.90[ASN][1000 genomes]
rs12997891	0.94[ASN][1000 genomes]
rs12998001	0.90[ASN][1000 genomes]
rs13030335	0.95[JPT][hapmap]
rs13031144	1.00[JPT][hapmap]
rs1483141	0.82[JPT][hapmap]
rs16846467	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16846484	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16846521	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs16846522	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs16846530	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs2170668	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs2200192	0.91[CEU][hapmap];0.87[JPT][hapmap]
rs2381190	0.90[CEU][hapmap];0.90[CHB][hapmap]
rs2890615	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4384715	0.82[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs4544370	0.82[JPT][hapmap]
rs4574055	0.82[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55742018	0.94[ASN][1000 genomes]
rs6429903	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6429908	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs6748975	0.94[ASN][1000 genomes]
rs68142404	0.83[EUR][1000 genomes]
rs72852491	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7583765	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7588818	0.91[JPT][hapmap]
rs7593962	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv470491	chr2:142254119-142299923	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	nsv583210	chr2:142259592-142295042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv459629	chr2:142263400-142295042	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv583211	chr2:142263400-142295042	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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