Variant report

Variant	rs11681928
Chromosome Location	chr2:142350130-142350131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142348226..142350841-chr2:142353391..142355433,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12467062	0.81[MEX][hapmap];0.81[TSI][hapmap]
rs12468830	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs12470072	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12474260	0.82[CEU][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12476844	0.85[EUR][1000 genomes]
rs12478973	0.85[MEX][hapmap];0.81[TSI][hapmap]
rs12612624	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12615716	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12615851	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12621499	0.90[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs13023434	0.89[MEX][hapmap]
rs16846467	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16846484	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16846506	0.83[CHB][hapmap]
rs16846521	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16846522	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16846530	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16855065	0.80[CHD][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs2170668	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2200192	0.82[CEU][hapmap]
rs2381190	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs2890615	1.00[CHB][hapmap]
rs4340449	0.81[MEX][hapmap]
rs4384715	0.90[MEX][hapmap];0.81[TSI][hapmap]
rs4544370	0.85[MEX][hapmap]
rs4574055	0.83[CEU][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap]
rs4599051	0.81[MEX][hapmap]
rs6429908	1.00[CHB][hapmap]
rs6729073	0.90[MEX][hapmap]
rs72853570	0.85[EUR][1000 genomes]
rs72855428	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7562751	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583233	chr2:142336104-142359850	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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