Variant report

Variant	rs7585325
Chromosome Location	chr2:142278425-142278426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10165979	1.00[AMR][1000 genomes]
rs10176397	1.00[AMR][1000 genomes]
rs10176693	1.00[AMR][1000 genomes]
rs10187180	1.00[AMR][1000 genomes]
rs10200578	1.00[AMR][1000 genomes]
rs10200782	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10200845	1.00[AMR][1000 genomes]
rs11887261	1.00[AMR][1000 genomes]
rs11904458	1.00[AMR][1000 genomes]
rs12466189	1.00[AMR][1000 genomes]
rs12472734	1.00[AMR][1000 genomes]
rs12617980	1.00[AMR][1000 genomes]
rs12618575	1.00[AMR][1000 genomes]
rs12691613	1.00[AMR][1000 genomes]
rs12691614	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12691615	1.00[AMR][1000 genomes]
rs1483138	1.00[AMR][1000 genomes]
rs1483152	1.00[AMR][1000 genomes]
rs2054655	0.81[AFR][1000 genomes]
rs2128694	1.00[AMR][1000 genomes]
rs2170667	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2381110	1.00[AMR][1000 genomes]
rs2381111	1.00[AMR][1000 genomes]
rs2381112	1.00[AMR][1000 genomes]
rs2381113	1.00[AMR][1000 genomes]
rs2381192	1.00[AMR][1000 genomes]
rs3935992	1.00[AMR][1000 genomes]
rs4008531	1.00[AMR][1000 genomes]
rs4245859	1.00[AMR][1000 genomes]
rs4264515	1.00[AMR][1000 genomes]
rs4296372	1.00[AMR][1000 genomes]
rs4366842	1.00[AMR][1000 genomes]
rs4396652	1.00[AMR][1000 genomes]
rs4439901	1.00[AMR][1000 genomes]
rs4441406	1.00[AMR][1000 genomes]
rs4476294	1.00[AMR][1000 genomes]
rs4477847	1.00[AMR][1000 genomes]
rs4555282	1.00[AMR][1000 genomes]
rs4954909	1.00[AMR][1000 genomes]
rs4954913	1.00[AMR][1000 genomes]
rs6429896	1.00[AMR][1000 genomes]
rs6429901	1.00[AMR][1000 genomes]
rs6429902	1.00[AMR][1000 genomes]
rs6706356	1.00[AMR][1000 genomes]
rs6706377	1.00[AMR][1000 genomes]
rs6707441	1.00[AMR][1000 genomes]
rs6708438	1.00[AMR][1000 genomes]
rs6710020	1.00[AMR][1000 genomes]
rs6713043	1.00[AMR][1000 genomes]
rs6718844	1.00[AMR][1000 genomes]
rs6737585	1.00[AMR][1000 genomes]
rs6749472	1.00[AMR][1000 genomes]
rs7557631	1.00[AMR][1000 genomes]
rs7572480	1.00[AMR][1000 genomes]
rs7582623	1.00[AMR][1000 genomes]
rs7593866	1.00[AMR][1000 genomes]
rs7607376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs983197	1.00[AMR][1000 genomes]
rs983198	1.00[AMR][1000 genomes]
rs983199	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv470491	chr2:142254119-142299923	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	nsv583210	chr2:142259592-142295042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv459629	chr2:142263400-142295042	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv583211	chr2:142263400-142295042	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142277200-142279000	Enhancers	Brain Angular Gyrus	brain
2	chr2:142277200-142279000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr2:142277800-142278600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:142278200-142278600	Active TSS	Brain Anterior Caudate	brain
5	chr2:142278200-142279600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:142278200-142280600	Enhancers	Brain Substantia Nigra	brain
7	chr2:142278400-142278600	Active TSS	Brain Hippocampus Middle	brain

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