Variant report

Variant	rs2054655
Chromosome Location	chr2:142305578-142305579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10165850	1.00[AMR][1000 genomes]
rs10170114	1.00[AMR][1000 genomes]
rs10200582	1.00[AMR][1000 genomes]
rs10200782	0.81[AFR][1000 genomes]
rs12691614	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs13406123	1.00[AMR][1000 genomes]
rs1384663	1.00[AMR][1000 genomes]
rs1905292	1.00[AMR][1000 genomes]
rs2054656	1.00[AMR][1000 genomes]
rs2128695	1.00[AMR][1000 genomes]
rs2170667	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4264515	0.81[MKK][hapmap]
rs4296372	0.90[MKK][hapmap]
rs6706356	0.81[MKK][hapmap]
rs6706377	0.89[MKK][hapmap]
rs6710020	0.81[MKK][hapmap]
rs7572480	0.81[YRI][hapmap]
rs7585325	0.81[AFR][1000 genomes]
rs7607376	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs900472	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142304400-142305600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:142304600-142305800	Weak transcription	Brain Substantia Nigra	brain
3	chr2:142304800-142305800	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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