Variant report

Variant	rs10200582
Chromosome Location	chr2:142306649-142306650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10165850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10165979	0.85[AFR][1000 genomes]
rs10170114	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10176397	0.85[AFR][1000 genomes]
rs10176693	0.81[AFR][1000 genomes]
rs10200578	0.81[AFR][1000 genomes]
rs10200845	0.85[AFR][1000 genomes]
rs11904458	0.81[AFR][1000 genomes]
rs12472734	0.85[AFR][1000 genomes]
rs12617980	0.81[AFR][1000 genomes]
rs12618575	0.81[AFR][1000 genomes]
rs12691613	0.81[AFR][1000 genomes]
rs12691615	0.85[AFR][1000 genomes]
rs13406123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1384663	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1483138	0.85[AFR][1000 genomes]
rs1483152	0.81[AFR][1000 genomes]
rs1905292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2054655	1.00[AMR][1000 genomes]
rs2054656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2128694	0.85[AFR][1000 genomes]
rs2128695	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2381110	0.85[AFR][1000 genomes]
rs2381111	0.85[AFR][1000 genomes]
rs2381112	0.85[AFR][1000 genomes]
rs2381113	0.85[AFR][1000 genomes]
rs2381192	0.81[AFR][1000 genomes]
rs4008531	0.85[AFR][1000 genomes]
rs4245859	0.81[AFR][1000 genomes]
rs4359580	0.81[AFR][1000 genomes]
rs4396652	0.81[AFR][1000 genomes]
rs4477847	0.81[AFR][1000 genomes]
rs6429901	0.85[AFR][1000 genomes]
rs6706356	0.85[AFR][1000 genomes]
rs6706377	0.85[AFR][1000 genomes]
rs6708438	0.81[AFR][1000 genomes]
rs6710020	0.85[AFR][1000 genomes]
rs6737585	0.81[AFR][1000 genomes]
rs7557631	0.85[AFR][1000 genomes]
rs7582623	0.85[AFR][1000 genomes]
rs900472	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs983197	0.81[AFR][1000 genomes]
rs983198	0.81[AFR][1000 genomes]
rs983199	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3412600	chr2:142306382-142310180	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142306200-142312200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:142306400-142312200	Weak transcription	Brain Substantia Nigra	brain

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