Variant report

Variant	rs1905292
Chromosome Location	chr2:142312469-142312470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10165850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10165979	0.85[AFR][1000 genomes]
rs10167487	0.85[YRI][hapmap]
rs10170114	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10176397	0.85[AFR][1000 genomes]
rs10176693	0.81[AFR][1000 genomes]
rs10191434	0.83[YRI][hapmap]
rs10200529	0.81[YRI][hapmap]
rs10200578	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs10200582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10200845	0.85[AFR][1000 genomes]
rs1038346	0.85[YRI][hapmap]
rs11904458	0.81[AFR][1000 genomes]
rs12472734	0.85[AFR][1000 genomes]
rs12617980	0.81[AFR][1000 genomes]
rs12618575	0.81[AFR][1000 genomes]
rs12691613	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs12691615	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs13406123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1384663	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1483138	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1483152	0.81[AFR][1000 genomes]
rs2054655	1.00[AMR][1000 genomes]
rs2054656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2128694	0.85[AFR][1000 genomes]
rs2128695	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2200190	1.00[YRI][hapmap]
rs2220071	1.00[YRI][hapmap]
rs2381110	0.85[AFR][1000 genomes]
rs2381111	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2381112	0.85[AFR][1000 genomes]
rs2381113	0.85[AFR][1000 genomes]
rs2381192	0.81[AFR][1000 genomes]
rs3856360	0.85[YRI][hapmap]
rs4008531	0.85[AFR][1000 genomes]
rs4245859	0.81[AFR][1000 genomes]
rs4264515	1.00[YRI][hapmap]
rs4359580	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs4396652	0.81[AFR][1000 genomes]
rs4477847	0.81[AFR][1000 genomes]
rs4482418	0.85[YRI][hapmap]
rs4536595	1.00[YRI][hapmap]
rs4538137	1.00[YRI][hapmap]
rs6429901	0.85[AFR][1000 genomes]
rs6706356	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6706377	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6707422	0.85[YRI][hapmap]
rs6707441	0.85[YRI][hapmap]
rs6708438	0.81[AFR][1000 genomes]
rs6710020	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6737585	0.81[AFR][1000 genomes]
rs6744340	1.00[YRI][hapmap]
rs7557631	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7582623	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7590820	0.85[YRI][hapmap]
rs900472	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs983197	0.81[AFR][1000 genomes]
rs983198	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs983199	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3422340	chr2:142310307-142312855	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3328447	chr2:142310532-142312980	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3421524	chr2:142310932-142312680	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142312200-142313000	Enhancers	Brain Anterior Caudate	brain
2	chr2:142312200-142313000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:142312200-142313000	Enhancers	Dnd41	blood
4	chr2:142312200-142313600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr2:142312200-142314600	Enhancers	Brain Substantia Nigra	brain
6	chr2:142312400-142312600	Enhancers	NH-A	brain
7	chr2:142312400-142312800	Enhancers	Brain Angular Gyrus	brain

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