Variant report

Variant	rs7585694
Chromosome Location	chr2:20275591-20275592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10165208	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.81[MEX][hapmap];0.89[ASN][1000 genomes]
rs1147119	0.82[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1191804	0.83[ASN][1000 genomes]
rs1191819	0.83[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1191821	0.83[ASN][1000 genomes]
rs1191822	0.83[ASN][1000 genomes]
rs1849601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1849602	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1870922	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs4666355	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6760839	0.89[ASN][1000 genomes]
rs7560747	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7585694	MATN3	cis	Artery Aorta	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20272000-20280600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:20272400-20277200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:20273000-20277000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:20273000-20279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:20273200-20281800	Weak transcription	Hela-S3	cervix
6	chr2:20274200-20275800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:20274200-20276600	Weak transcription	Fetal Intestine Small	intestine
8	chr2:20274200-20281800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:20274400-20278000	Enhancers	HepG2	liver
10	chr2:20274600-20280600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:20275000-20277400	Weak transcription	Placenta	Placenta
12	chr2:20275000-20278000	Weak transcription	Left Ventricle	heart
13	chr2:20275000-20280000	Weak transcription	K562	blood
14	chr2:20275000-20280200	Weak transcription	Ovary	ovary
15	chr2:20275000-20280200	Weak transcription	Pancreas	Pancrea
16	chr2:20275000-20280400	Weak transcription	Spleen	Spleen
17	chr2:20275200-20276200	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:20275200-20280600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links