Variant report

Variant	rs7585751
Chromosome Location	chr2:169594581-169594582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169593432..169595762-chr2:169596356..169597936,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12692886	0.83[ASN][1000 genomes]
rs1402840	0.83[ASN][1000 genomes]
rs2390731	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233821	0.83[ASN][1000 genomes]
rs4668101	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668103	0.83[ASN][1000 genomes]
rs6433088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433092	0.83[ASN][1000 genomes]
rs7558965	1.00[ASN][1000 genomes]
rs7589456	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169562200-169598800	Weak transcription	Gastric	stomach
2	chr2:169565200-169622800	Weak transcription	Liver	Liver
3	chr2:169575200-169594800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr2:169577600-169606400	Weak transcription	Thymus	Thymus
5	chr2:169577600-169613600	Weak transcription	Fetal Kidney	kidney
6	chr2:169579600-169596400	Weak transcription	Ovary	ovary
7	chr2:169579600-169606000	Weak transcription	Pancreas	Pancrea
8	chr2:169579600-169610400	Weak transcription	HepG2	liver
9	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
10	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:169580400-169610600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr2:169580600-169594600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:169580600-169597000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:169580800-169604200	Weak transcription	Fetal Thymus	thymus
15	chr2:169580800-169610600	Weak transcription	Primary B cells from cord blood	blood
16	chr2:169581000-169612000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:169581200-169606400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:169581400-169597600	Weak transcription	Fetal Intestine Large	intestine
19	chr2:169581600-169601200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr2:169581600-169610400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr2:169583800-169613000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr2:169586000-169627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:169586200-169607600	Weak transcription	Fetal Stomach	stomach
24	chr2:169586600-169606400	Weak transcription	GM12878-XiMat	blood
25	chr2:169586800-169598000	Weak transcription	Fetal Intestine Small	intestine
26	chr2:169587200-169606200	Weak transcription	Right Atrium	heart
27	chr2:169587800-169596200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr2:169587800-169623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:169588400-169597000	Weak transcription	K562	blood
30	chr2:169588400-169600800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:169588600-169602600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:169588600-169605400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:169588800-169595000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr2:169589000-169594600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr2:169589400-169598400	Weak transcription	Primary T cells from cord blood	blood
36	chr2:169590400-169594600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:169590600-169600800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr2:169590800-169595400	Enhancers	Fetal Heart	heart
39	chr2:169591000-169596200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr2:169591000-169605000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr2:169591200-169604600	Weak transcription	Fetal Muscle Leg	muscle
42	chr2:169591200-169604600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr2:169591400-169605000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr2:169592200-169605000	Weak transcription	Right Ventricle	heart
45	chr2:169593000-169594800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:169593200-169595000	Enhancers	Fetal Brain Female	brain
47	chr2:169593200-169595200	Enhancers	Brain Germinal Matrix	brain
48	chr2:169593400-169612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr2:169593600-169595200	Weak transcription	Left Ventricle	heart
50	chr2:169593600-169601000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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