Variant report

Variant	rs7589456
Chromosome Location	chr2:169595642-169595643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169593432..169595762-chr2:169596356..169597936,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12692886	0.83[ASN][1000 genomes]
rs1402840	0.83[ASN][1000 genomes]
rs2390731	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233821	0.83[ASN][1000 genomes]
rs4668101	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668103	0.83[ASN][1000 genomes]
rs6433088	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433092	0.83[ASN][1000 genomes]
rs7558965	1.00[ASN][1000 genomes]
rs7585751	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169562200-169598800	Weak transcription	Gastric	stomach
2	chr2:169565200-169622800	Weak transcription	Liver	Liver
3	chr2:169577600-169606400	Weak transcription	Thymus	Thymus
4	chr2:169577600-169613600	Weak transcription	Fetal Kidney	kidney
5	chr2:169579600-169596400	Weak transcription	Ovary	ovary
6	chr2:169579600-169606000	Weak transcription	Pancreas	Pancrea
7	chr2:169579600-169610400	Weak transcription	HepG2	liver
8	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
9	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:169580400-169610600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr2:169580600-169597000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr2:169580800-169604200	Weak transcription	Fetal Thymus	thymus
13	chr2:169580800-169610600	Weak transcription	Primary B cells from cord blood	blood
14	chr2:169581000-169612000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:169581200-169606400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:169581400-169597600	Weak transcription	Fetal Intestine Large	intestine
17	chr2:169581600-169601200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr2:169581600-169610400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr2:169583800-169613000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr2:169586000-169627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:169586200-169607600	Weak transcription	Fetal Stomach	stomach
22	chr2:169586600-169606400	Weak transcription	GM12878-XiMat	blood
23	chr2:169586800-169598000	Weak transcription	Fetal Intestine Small	intestine
24	chr2:169587200-169606200	Weak transcription	Right Atrium	heart
25	chr2:169587800-169596200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr2:169587800-169623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:169588400-169597000	Weak transcription	K562	blood
28	chr2:169588400-169600800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr2:169588600-169602600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:169588600-169605400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr2:169589400-169598400	Weak transcription	Primary T cells from cord blood	blood
32	chr2:169590600-169600800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr2:169591000-169596200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr2:169591000-169605000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr2:169591200-169604600	Weak transcription	Fetal Muscle Leg	muscle
36	chr2:169591200-169604600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr2:169591400-169605000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr2:169592200-169605000	Weak transcription	Right Ventricle	heart
39	chr2:169593400-169612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr2:169593600-169601000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:169593800-169604800	Weak transcription	Brain Angular Gyrus	brain
42	chr2:169594000-169611000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:169594400-169607600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr2:169594600-169595800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr2:169594800-169598200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:169594800-169605200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:169595000-169608400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:169595000-169610600	Weak transcription	HMEC	breast
49	chr2:169595200-169595800	Enhancers	Left Ventricle	heart
50	chr2:169595200-169597200	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links