Variant report
| Variant | rs7585949 |
|---|---|
| Chromosome Location | chr2:173002392-173002393 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:172999674..173002716-chr2:173011251..173014037,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs10930508 | 1.00[ASN][1000 genomes] |
| rs1971267 | 1.00[ASN][1000 genomes] |
| rs4972640 | 1.00[AMR][1000 genomes] |
| rs6754975 | 1.00[AMR][1000 genomes] |
| rs788175 | 1.00[AMR][1000 genomes] |
| rs901522 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1827284 | chr2:172997770-173006567 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv511188 | chr2:173001058-173006031 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1842589 | chr2:173001058-173006567 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv528818 | chr2:173001058-173013373 | Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv583631 | chr2:173001533-173006567 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv583632 | chr2:173001533-173006833 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv435726 | chr2:173001856-173008530 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | esv3459871 | chr2:173002306-173009204 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:173002200-173012600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
