Variant report

Variant	rs788175
Chromosome Location	chr2:172958265-172958266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172750557..172752237-chr2:172957571..172960276,3	MCF-7	breast:
2	chr2:172801972..172804580-chr2:172958176..172960295,2	MCF-7	breast:
3	chr2:172860722..172865084-chr2:172957574..172960458,3	K562	blood:
4	chr2:172844335..172847013-chr2:172956341..172958863,2	MCF-7	breast:
5	chr2:172854755..172858699-chr2:172956896..172962268,5	MCF-7	breast:
6	chr2:172911212..172913559-chr2:172957702..172960003,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172878	Chromatin interaction
ENSG00000115840	Chromatin interaction

rs_ID	r²[population]
rs4972640	1.00[AMR][1000 genomes]
rs6754975	1.00[AMR][1000 genomes]
rs7585949	1.00[AMR][1000 genomes]
rs901522	1.00[AMR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172949800-172960800	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr2:172950400-172959000	Weak transcription	Hela-S3	cervix
3	chr2:172954400-172962600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
4	chr2:172957400-172958400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
5	chr2:172957400-172958800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:172957600-172958600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr2:172957600-172958800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr2:172957600-172959000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:172957600-172959600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr2:172957800-172959000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:172957800-172959000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:172957800-172959600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
13	chr2:172957800-172959600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
14	chr2:172958000-172958400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
15	chr2:172958000-172958400	Bivalent Enhancer	Adipose Nuclei	Adipose
16	chr2:172958000-172958400	Bivalent Enhancer	NHLF	lung
17	chr2:172958000-172958600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
18	chr2:172958000-172958600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
19	chr2:172958000-172958600	Bivalent Enhancer	Osteobl	bone
20	chr2:172958000-172958800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
21	chr2:172958000-172959000	Bivalent Enhancer	HMEC	breast
22	chr2:172958000-172959400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:172958000-172959800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:172958000-172960600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:172958200-172958400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
26	chr2:172958200-172958400	Enhancers	K562	blood
27	chr2:172958200-172958600	Flanking Bivalent TSS/Enh	NHEK	skin
28	chr2:172958200-172958800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:172958200-172959800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
30	chr2:172958200-172959800	Bivalent Enhancer	Fetal Thymus	thymus

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