Variant report

Variant	rs7587985
Chromosome Location	chr2:114559118-114559119
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2900745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56884727	0.83[ASN][1000 genomes]
rs62170136	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7567042	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7588108	0.86[EUR][1000 genomes]

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs7587985	DDX11L2	cis	Esophagus Mucosa	GTEx
rs7587985	DDX11L2	cis	Artery Tibial	GTEx
rs7587985	DDX11L2	cis	Heart Left Ventricle	GTEx
rs7587985	RPL23AP7	cis	lung	GTEx
rs7587985	DDX11L2	cis	Adipose Subcutaneous	GTEx
rs7587985	RPL23AP7	cis	Heart Left Ventricle	GTEx
rs7587985	RPL23AP7	cis	Artery Tibial	GTEx
rs7587985	DDX11L2	cis	lung	GTEx
rs7587985	RPL23AP7	cis	Artery Aorta	GTEx
rs7587985	SLC35F5	Cis_1M	lymphoblastoid	RTeQTL
rs7587985	DDX11L2	cis	Nerve Tibial	GTEx
rs7587985	DDX11L2	cis	Muscle Skeletal	GTEx
rs7587985	RPL23AP7	cis	Whole Blood	GTEx
rs7587985	DDX11L2	cis	Thyroid	GTEx
rs7587985	DDX11L2	cis	Whole Blood	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114550200-114563800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr2:114554600-114564400	Weak transcription	Small Intestine	intestine
3	chr2:114558600-114559800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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