Variant report

Variant	rs7588108
Chromosome Location	chr2:114566404-114566405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2900745	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62170136	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72946678	0.80[EUR][1000 genomes]
rs7567042	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7587985	0.86[EUR][1000 genomes]

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs7588108	DDX11L2	cis	Nerve Tibial	GTEx
rs7588108	DDX11L2	cis	Adipose Subcutaneous	GTEx
rs7588108	RPL23AP7	cis	lung	GTEx
rs7588108	DDX11L2	cis	Esophagus Mucosa	GTEx
rs7588108	RPL23AP7	cis	Heart Left Ventricle	GTEx
rs7588108	DDX11L2	cis	lung	GTEx
rs7588108	DDX11L2	cis	Artery Tibial	GTEx
rs7588108	RPL23AP7	cis	Whole Blood	GTEx
rs7588108	DDX11L2	cis	Whole Blood	GTEx
rs7588108	SLC35F5	Cis_1M	lymphoblastoid	RTeQTL
rs7588108	RPL23AP7	cis	Muscle Skeletal	GTEx
rs7588108	DDX11L2	cis	Muscle Skeletal	GTEx
rs7588108	RPL23AP7	cis	Artery Tibial	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114564800-114567000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:114565000-114569800	Weak transcription	A549	lung
3	chr2:114566400-114566600	Enhancers	K562	blood
4	chr2:114566400-114567600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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