Variant report
| Variant | rs7588890 |
|---|---|
| Chromosome Location | chr2:212043724-212043725 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:212042472..212044097-chr2:212046243..212049125,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10166020 | 0.83[EUR][1000 genomes] |
| rs10188775 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10439342 | 0.81[EUR][1000 genomes] |
| rs11683081 | 0.87[EUR][1000 genomes] |
| rs12478781 | 0.81[EUR][1000 genomes] |
| rs13013863 | 0.83[EUR][1000 genomes] |
| rs13398354 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1344910 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2164707 | 0.81[EUR][1000 genomes] |
| rs2371127 | 0.80[EUR][1000 genomes] |
| rs35597908 | 0.80[EUR][1000 genomes] |
| rs4673579 | 0.81[EUR][1000 genomes] |
| rs4673580 | 0.81[EUR][1000 genomes] |
| rs6745824 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012193 | chr2:211684524-212072213 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834521 | chr2:211918881-212057872 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv875774 | chr2:212016056-212047120 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv875775 | chr2:212021755-212047120 | Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212039000-212045800 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
