Variant report
| Variant | rs10439342 |
|---|---|
| Chromosome Location | chr2:212000578-212000579 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10166020 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10439343 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11683081 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12478390 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12478781 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12694216 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13013863 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13389697 | 0.81[EUR][1000 genomes] |
| rs13400493 | 0.80[AMR][1000 genomes] |
| rs13402780 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13407489 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs17799315 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2164707 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2371127 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs35597908 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4673579 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4673580 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6745824 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs71422729 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7588890 | 0.81[EUR][1000 genomes] |
| rs7589906 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012193 | chr2:211684524-212072213 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834521 | chr2:211918881-212057872 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv875773 | chr2:211973600-212041403 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3345007 | chr2:211998607-212001055 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3371809 | chr2:211998707-212000955 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 6 | esv3424240 | chr2:211998732-212001480 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:211998800-212004600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr2:211998800-212009400 | Weak transcription | HSMM | muscle |
