Variant report

Variant	rs12478390
Chromosome Location	chr2:211989022-211989023
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:211979527..211981470-chr2:211988454..211991128,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10166020	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10197796	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10439342	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10439343	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12478781	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12694214	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12694215	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12694216	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13013863	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13389697	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13400493	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13402780	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13407489	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370343	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17799315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2164707	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2371127	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35597908	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4673579	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4673580	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6745824	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7589906	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460063	chr2:211981894-211996803	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv584311	chr2:211981894-211996803	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211987800-211989600	Weak transcription	Fetal Brain Male	brain
2	chr2:211989000-211991600	Enhancers	Brain Germinal Matrix	brain

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