Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10166020	0.81[EUR][1000 genomes]
rs10197796	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10439342	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10439343	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12478390	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12478781	0.83[EUR][1000 genomes]
rs12694214	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12694215	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12694216	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13013863	0.81[EUR][1000 genomes]
rs13389697	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13400493	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13407489	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1370343	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17799315	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2164707	0.83[EUR][1000 genomes]
rs2371127	0.82[EUR][1000 genomes]
rs35597908	0.82[EUR][1000 genomes]
rs4673579	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4673580	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6745824	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7589906	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3345007	chr2:211998607-212001055	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211994600-211998800	Enhancers	Hela-S3	cervix
2	chr2:211996400-211998800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:211996400-211998800	Enhancers	HSMM	muscle
4	chr2:211996600-211998800	Enhancers	NH-A	brain
5	chr2:211996800-211998800	Enhancers	HMEC	breast
6	chr2:211996800-211998800	Enhancers	HUVEC	blood vessel
7	chr2:211996800-211999000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:211996800-211999000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:211997000-211998800	Enhancers	HSMMtube	muscle
10	chr2:211997000-211998800	Enhancers	NHEK	skin
11	chr2:211997000-211998800	Enhancers	Osteobl	bone
12	chr2:211997400-211998800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:211997400-211998800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:211997600-211998800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:211998200-211998800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:211998600-211998800	Enhancers	Pancreas	Pancrea

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