Variant report

Variant	rs7589460
Chromosome Location	chr2:48351901-48351902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:48350651..48352658-chr2:48357259..48359180,2	MCF-7	breast:
2	chr2:48344714..48347546-chr2:48349230..48353407,5	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10196696	0.88[EUR][1000 genomes]
rs10199698	0.85[JPT][hapmap]
rs10865228	0.93[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11125165	0.89[ASN][1000 genomes]
rs11125166	0.81[ASN][1000 genomes]
rs1483213	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1483221	0.81[AMR][1000 genomes]
rs2056138	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2128719	0.83[ASN][1000 genomes]
rs2136456	0.96[ASN][1000 genomes]
rs2220075	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2348717	1.00[ASN][1000 genomes]
rs2348718	0.96[ASN][1000 genomes]
rs2882003	0.89[ASN][1000 genomes]
rs4146603	0.89[ASN][1000 genomes]
rs4952905	0.96[ASN][1000 genomes]
rs4953548	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4953549	1.00[ASN][1000 genomes]
rs4953552	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4953553	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4953555	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs4953556	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4953557	0.89[ASN][1000 genomes]
rs58178746	0.89[ASN][1000 genomes]
rs58525908	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6545018	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6545021	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545023	0.89[ASN][1000 genomes]
rs6712238	1.00[ASN][1000 genomes]
rs6717617	0.85[JPT][hapmap]
rs6718037	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720994	0.85[EUR][1000 genomes]
rs6722407	1.00[ASN][1000 genomes]
rs6723952	1.00[ASN][1000 genomes]
rs6732149	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6749276	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7566525	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7570354	0.89[ASN][1000 genomes]
rs7584401	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7584493	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7605361	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7605366	0.90[ASN][1000 genomes]
rs7609124	1.00[ASN][1000 genomes]
rs922902	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs922903	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963134	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9677729	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs973894	0.89[ASN][1000 genomes]
rs990063	0.89[ASN][1000 genomes]
rs990549	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009769	chr2:47972642-48509765	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv535680	chr2:47972642-48509765	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv530831	chr2:48059709-48632317	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv519831	chr2:48072855-48566031	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv1003766	chr2:48102244-48559654	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv1000455	chr2:48202161-48362638	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv581773	chr2:48277490-48443109	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48342200-48353000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:48349000-48354600	Weak transcription	K562	blood
3	chr2:48349200-48352000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:48349200-48352600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr2:48350800-48353600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:48351000-48352200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:48351000-48352200	Enhancers	HSMM	muscle
8	chr2:48351400-48352400	Enhancers	NHDF-Ad	bronchial
9	chr2:48351600-48352000	Enhancers	Osteobl	bone
10	chr2:48351600-48352200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:48351600-48353600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:48351800-48352200	Enhancers	HSMMtube	muscle

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