Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10496084	0.82[JPT][hapmap]
rs12463540	0.82[JPT][hapmap]
rs12470403	0.82[JPT][hapmap]
rs12476222	0.82[JPT][hapmap]
rs1518396	0.82[JPT][hapmap]
rs1518397	0.82[JPT][hapmap]
rs1518398	0.82[JPT][hapmap]
rs17049167	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17049244	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17049262	0.82[JPT][hapmap]
rs17049272	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs17049273	0.82[JPT][hapmap]
rs17049278	0.82[JPT][hapmap]
rs17049282	0.82[JPT][hapmap]
rs17049288	0.82[JPT][hapmap]
rs2717062	0.98[EUR][1000 genomes]
rs35442738	0.83[EUR][1000 genomes]
rs56403013	0.83[EUR][1000 genomes]
rs6719624	0.83[EUR][1000 genomes]
rs6754296	0.85[EUR][1000 genomes]
rs72808434	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72808453	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72808464	0.86[EUR][1000 genomes]
rs7558693	0.82[JPT][hapmap]
rs7583473	0.94[EUR][1000 genomes]
rs7600039	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv874199	chr2:58031249-58161520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58119400-58124800	Weak transcription	Fetal Intestine Large	intestine
2	chr2:58121800-58124800	Weak transcription	Fetal Intestine Small	intestine
3	chr2:58122400-58122800	Flanking Active TSS	GM12878-XiMat	blood

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