Variant report
| Variant | rs7600039 |
|---|---|
| Chromosome Location | chr2:58076075-58076076 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10496084 | 0.82[JPT][hapmap] |
| rs12463540 | 0.83[JPT][hapmap] |
| rs12470403 | 0.82[JPT][hapmap] |
| rs12470851 | 1.00[YRI][hapmap] |
| rs12476222 | 0.82[JPT][hapmap] |
| rs1518396 | 0.82[JPT][hapmap] |
| rs1518397 | 0.82[JPT][hapmap] |
| rs1518398 | 0.83[JPT][hapmap] |
| rs17049167 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17049244 | 1.00[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17049262 | 0.82[JPT][hapmap] |
| rs17049272 | 0.82[CEU][hapmap];0.83[JPT][hapmap] |
| rs17049273 | 0.83[JPT][hapmap] |
| rs17049278 | 0.83[JPT][hapmap] |
| rs17049282 | 0.83[JPT][hapmap] |
| rs17049288 | 0.82[JPT][hapmap] |
| rs17049312 | 1.00[YRI][hapmap] |
| rs17049316 | 0.83[YRI][hapmap] |
| rs2717062 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs35442738 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs56403013 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6719624 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6754296 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs67973994 | 0.90[ASN][1000 genomes] |
| rs72808434 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs72808453 | 0.83[AMR][1000 genomes] |
| rs7558693 | 0.83[JPT][hapmap] |
| rs7583473 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7595529 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007118 | chr2:57562051-58147588 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv874196 | chr2:57946148-58220320 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv834148 | chr2:57979661-58119213 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1010981 | chr2:58013389-58205699 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv874199 | chr2:58031249-58161520 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:58076000-58076200 | ZNF genes & repeats | Pancreas | Pancrea |
| 2 | chr2:58076000-58077400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
