Variant report

Variant	rs7601113
Chromosome Location	chr2:160935894-160935895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160902576..160905103-chr2:160933519..160935962,2	MCF-7	breast:
2	chr2:160918468..160920630-chr2:160935053..160937669,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153246	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10192293	1.00[YRI][hapmap]
rs10454740	1.00[YRI][hapmap]
rs11884542	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11887337	1.00[YRI][hapmap]
rs11896215	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11901072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11904720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13018963	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13032589	1.00[YRI][hapmap]
rs13394776	1.00[YRI][hapmap]
rs13408963	0.97[ASN][1000 genomes]
rs13427061	1.00[YRI][hapmap]
rs1397715	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1457240	1.00[YRI][hapmap]
rs1471121	1.00[YRI][hapmap]
rs2061288	1.00[YRI][hapmap]
rs2357773	1.00[YRI][hapmap]
rs2667033	1.00[YRI][hapmap]
rs2715933	1.00[YRI][hapmap]
rs2925756	1.00[YRI][hapmap]
rs2925763	1.00[YRI][hapmap]
rs35109557	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4076844	0.97[ASN][1000 genomes]
rs4129786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4233679	1.00[YRI][hapmap]
rs4293528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4332877	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4470295	0.99[ASN][1000 genomes]
rs4474838	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4522556	0.99[ASN][1000 genomes]
rs4564734	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4608472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4665151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4665153	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4665155	1.00[YRI][hapmap]
rs4992684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55641767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6432584	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6432585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6432588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6432593	1.00[YRI][hapmap]
rs6432603	1.00[YRI][hapmap]
rs67200222	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6729540	1.00[YRI][hapmap]
rs7573270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7580525	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7583743	1.00[YRI][hapmap]
rs7584530	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7595738	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7597518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7598162	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7608152	1.00[YRI][hapmap]
rs996112	1.00[YRI][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160929200-160936200	Enhancers	Fetal Intestine Small	intestine
2	chr2:160929400-160936200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr2:160929400-160940200	Weak transcription	Right Atrium	heart
4	chr2:160934800-160936200	Enhancers	Colonic Mucosa	Colon
5	chr2:160934800-160936400	Enhancers	Fetal Intestine Large	intestine

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