Variant report

Variant	rs4665155
Chromosome Location	chr2:160959286-160959287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160942970..160945799-chr2:160958862..160960784,2	MCF-7	breast:
2	chr2:160953931..160959530-chr2:160960677..160963747,5	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10454740	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10803761	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11887337	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12692582	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12999707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13031600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032589	1.00[YRI][hapmap]
rs13394776	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13414434	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13427061	1.00[YRI][hapmap]
rs1457233	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1457240	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs1457241	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1471120	0.81[EUR][1000 genomes]
rs1471121	1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs1840893	0.85[EUR][1000 genomes]
rs2061288	1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs2357773	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2667031	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2667033	1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2715929	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2715933	1.00[YRI][hapmap]
rs2925756	1.00[YRI][hapmap]
rs2925763	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs4129787	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233679	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4324285	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4368286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4399677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4665149	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6432582	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6432587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432593	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432603	1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720128	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6729540	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749513	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6752593	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6761082	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7558852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583743	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7601113	1.00[YRI][hapmap]
rs7608152	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs996112	1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160948600-160959800	Weak transcription	HSMM	muscle
2	chr2:160950800-160967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:160953200-160970800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr2:160954600-160970800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:160954600-160993000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:160954800-160963800	Weak transcription	Fetal Intestine Large	intestine
7	chr2:160954800-160966200	Weak transcription	Fetal Intestine Small	intestine
8	chr2:160955400-160965000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:160955800-160968800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:160956200-160965600	Strong transcription	HMEC	breast
11	chr2:160957000-160970200	Weak transcription	Pancreas	Pancrea
12	chr2:160957400-160981200	Weak transcription	Lung	lung
13	chr2:160958400-160959400	Strong transcription	Psoas Muscle	Psoas
14	chr2:160958400-160965200	Strong transcription	NHEK	skin
15	chr2:160958600-160959400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:160958600-160960000	Enhancers	HSMMtube	muscle
17	chr2:160958600-160960400	Enhancers	Placenta	Placenta
18	chr2:160958600-160961200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:160958800-160959800	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr2:160958800-160960600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr2:160959000-160959400	Genic enhancers	Placenta Amnion	Placenta Amnion
22	chr2:160959000-160960800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:160959200-160959400	Enhancers	Esophagus	oesophagus
24	chr2:160959200-160960200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:160959200-160960400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:160959200-160963800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr2:160959200-161004200	Weak transcription	Gastric	stomach

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