Variant report

Variant	rs6752593
Chromosome Location	chr2:160932499-160932500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10454740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10497208	0.81[CEU][hapmap]
rs10803761	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10929970	0.86[CEU][hapmap]
rs10929971	0.84[CEU][hapmap]
rs11887337	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11897691	0.84[CEU][hapmap]
rs11902965	0.80[CEU][hapmap]
rs12614284	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs12692582	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12999707	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13027372	0.84[CEU][hapmap]
rs13031600	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13394776	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13414434	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13427061	0.91[CEU][hapmap]
rs1457233	0.91[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1457235	0.84[CEU][hapmap]
rs1457238	0.80[CEU][hapmap]
rs1457240	0.91[CEU][hapmap]
rs1457241	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1471120	0.91[CEU][hapmap]
rs1471121	0.91[CEU][hapmap]
rs16844824	0.80[CEU][hapmap]
rs17341294	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs1902622	0.81[CEU][hapmap]
rs2061288	0.91[CEU][hapmap]
rs2357773	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2667031	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2667033	0.95[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2715929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2925756	0.87[CEU][hapmap]
rs2925763	0.91[CEU][hapmap]
rs3792194	0.81[JPT][hapmap]
rs3792196	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs4129787	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4233679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4233680	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4324285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4368286	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4399677	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4665149	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4665155	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432582	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6432587	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432590	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6432593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432600	0.84[CEU][hapmap]
rs6432601	0.84[CEU][hapmap]
rs6432602	0.81[CEU][hapmap]
rs6432603	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6720128	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6729540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6749513	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6761082	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7563574	0.84[CEU][hapmap]
rs7569555	0.80[CEU][hapmap]
rs7579481	0.81[CEU][hapmap]
rs7583743	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7584446	0.81[CEU][hapmap]
rs7608152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs996112	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160927200-160934600	Weak transcription	Placenta	Placenta
2	chr2:160929200-160936200	Enhancers	Fetal Intestine Small	intestine
3	chr2:160929400-160936200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr2:160929400-160940200	Weak transcription	Right Atrium	heart
5	chr2:160929800-160934400	Enhancers	Fetal Intestine Large	intestine
6	chr2:160930200-160934600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:160931000-160933000	Enhancers	Hela-S3	cervix
8	chr2:160931200-160933200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:160931200-160934400	Enhancers	HUVEC	blood vessel
10	chr2:160931600-160933800	Enhancers	Spleen	Spleen
11	chr2:160931800-160932800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:160931800-160932800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:160932000-160932800	Weak transcription	Adipose Nuclei	Adipose
14	chr2:160932000-160933000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr2:160932000-160933800	Enhancers	Pancreas	Pancrea
16	chr2:160932200-160933400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr2:160932200-160933400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr2:160932200-160933600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr2:160932200-160933600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:160932200-160933600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr2:160932200-160933600	Weak transcription	Small Intestine	intestine
22	chr2:160932400-160934400	Weak transcription	HMEC	breast
23	chr2:160932400-160934600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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