Variant report

Variant	rs4129787
Chromosome Location	chr2:160953960-160953961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160953931..160959530-chr2:160960677..160963747,5	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10454740	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497208	0.81[CEU][hapmap]
rs10803761	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10929970	0.86[CEU][hapmap]
rs10929971	0.84[CEU][hapmap]
rs11887337	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11897691	0.84[CEU][hapmap]
rs11902965	0.81[CEU][hapmap]
rs12692582	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12999707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027372	0.84[CEU][hapmap]
rs13031600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032589	1.00[YRI][hapmap]
rs13394776	0.92[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13414434	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13427061	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs1457233	0.92[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1457235	0.84[CEU][hapmap]
rs1457238	0.81[CEU][hapmap]
rs1457240	0.91[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs1457241	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1471120	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs1471121	0.92[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs16844824	0.81[CEU][hapmap]
rs1840893	0.84[EUR][1000 genomes]
rs1902622	0.81[CEU][hapmap]
rs2061288	0.91[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs2357773	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2667031	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2667033	0.96[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2715929	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2715933	1.00[YRI][hapmap]
rs2925756	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs2925763	0.91[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs4233679	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233680	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4324285	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4368286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4399677	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4665149	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4665155	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432582	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6432587	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432590	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432593	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432600	0.84[CEU][hapmap]
rs6432601	0.84[CEU][hapmap]
rs6432602	0.81[CEU][hapmap]
rs6432603	0.96[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720128	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6729540	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749513	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6752593	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6761082	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7558852	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563574	0.84[CEU][hapmap]
rs7569555	0.81[CEU][hapmap]
rs7579481	0.81[CEU][hapmap]
rs7583743	0.96[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7584446	0.81[CEU][hapmap]
rs7601113	1.00[YRI][hapmap]
rs7608152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs996112	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160948600-160959800	Weak transcription	HSMM	muscle
2	chr2:160949600-160955800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:160950400-160958600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:160950800-160967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:160952600-160954400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:160952600-160955400	Enhancers	HMEC	breast
7	chr2:160953000-160955000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:160953200-160954200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:160953200-160970800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:160953400-160954000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr2:160953400-160955800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:160953400-160958400	Weak transcription	NHEK	skin
13	chr2:160953800-160954600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:160953800-160954600	Enhancers	Duodenum Mucosa	Duodenum
15	chr2:160953800-160954800	Enhancers	Fetal Intestine Large	intestine
16	chr2:160953800-160954800	Enhancers	Fetal Intestine Small	intestine
17	chr2:160953800-160954800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr2:160953800-160958600	Weak transcription	HSMMtube	muscle
19	chr2:160953800-160959000	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links