Variant report

Variant	rs7558852
Chromosome Location	chr2:160935272-160935273
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160902576..160905103-chr2:160933519..160935962,2	MCF-7	breast:
2	chr2:160929802..160931814-chr2:160933151..160935876,2	MCF-7	breast:
3	chr2:160918468..160920630-chr2:160935053..160937669,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153246	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10454740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497208	0.81[CEU][hapmap]
rs10803761	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10929970	0.86[CEU][hapmap]
rs10929971	0.84[CEU][hapmap]
rs11887337	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11897691	0.85[CEU][hapmap]
rs11902965	0.81[CEU][hapmap]
rs12614284	0.81[JPT][hapmap]
rs12692582	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12999707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027372	0.84[CEU][hapmap]
rs13031600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394776	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13414434	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13427061	0.92[CEU][hapmap]
rs1457233	0.92[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1457235	0.84[CEU][hapmap]
rs1457238	0.81[CEU][hapmap]
rs1457240	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1457241	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1471120	0.91[CEU][hapmap]
rs1471121	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs16844824	0.81[CEU][hapmap]
rs17341294	0.80[JPT][hapmap]
rs1840893	0.83[EUR][1000 genomes]
rs1902622	0.81[CEU][hapmap]
rs2061288	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2357773	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2667031	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2667033	0.96[CEU][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2715929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2925756	0.87[CEU][hapmap]
rs2925763	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs3792194	0.81[JPT][hapmap]
rs3792196	0.81[JPT][hapmap]
rs4129787	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233680	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4324285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4368286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4399677	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4665149	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4665155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432582	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6432587	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432590	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432600	0.85[CEU][hapmap]
rs6432601	0.84[CEU][hapmap]
rs6432602	0.81[CEU][hapmap]
rs6432603	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720128	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6729540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749513	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6752593	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6761082	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7563574	0.85[CEU][hapmap]
rs7569555	0.81[CEU][hapmap]
rs7579481	0.81[CEU][hapmap]
rs7583743	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7584446	0.81[CEU][hapmap]
rs7608152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs996112	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160929200-160936200	Enhancers	Fetal Intestine Small	intestine
2	chr2:160929400-160936200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr2:160929400-160940200	Weak transcription	Right Atrium	heart
4	chr2:160934800-160935800	Enhancers	Duodenum Mucosa	Duodenum
5	chr2:160934800-160936200	Enhancers	Colonic Mucosa	Colon
6	chr2:160934800-160936400	Enhancers	Fetal Intestine Large	intestine

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