Variant report

Variant	rs7602924
Chromosome Location	chr2:37460587-37460588
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37458143..37460778-chr2:37473170..37474857,2	MCF-7	breast:
2	chr2:37460312..37461934-chr2:37492568..37495549,2	K562	blood:
3	chr2:37458068..37462101-chr2:37468406..37471417,5	K562	blood:

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10177970	0.87[EUR][1000 genomes]
rs10178975	0.86[EUR][1000 genomes]
rs11124575	0.87[EUR][1000 genomes]
rs12712530	0.86[EUR][1000 genomes]
rs13409250	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1861444	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2041837	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2041840	0.93[EUR][1000 genomes]
rs2110962	0.87[EUR][1000 genomes]
rs2110964	0.91[EUR][1000 genomes]
rs2160391	0.82[EUR][1000 genomes]
rs2160392	0.85[EUR][1000 genomes]
rs2160393	0.86[EUR][1000 genomes]
rs2160395	0.91[EUR][1000 genomes]
rs2372888	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2372990	0.84[EUR][1000 genomes]
rs2430494	0.90[EUR][1000 genomes]
rs2465488	0.81[EUR][1000 genomes]
rs2540972	0.82[EUR][1000 genomes]
rs2540973	0.82[EUR][1000 genomes]
rs2540977	0.93[EUR][1000 genomes]
rs2714470	0.90[EUR][1000 genomes]
rs3902740	0.86[EUR][1000 genomes]
rs4670678	0.89[EUR][1000 genomes]
rs4670691	0.82[EUR][1000 genomes]
rs6544065	0.86[EUR][1000 genomes]
rs6730503	0.84[EUR][1000 genomes]
rs6742641	0.84[EUR][1000 genomes]
rs7579990	0.88[EUR][1000 genomes]
rs759461	0.91[EUR][1000 genomes]
rs7601628	0.90[EUR][1000 genomes]
rs8243	0.92[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37456800-37460600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:37457000-37461000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr2:37457200-37461000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr2:37459600-37460600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
5	chr2:37459600-37460600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:37459800-37460600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr2:37459800-37460600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr2:37459800-37460600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:37459800-37460600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr2:37459800-37460600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:37459800-37460600	Enhancers	Ovary	ovary
12	chr2:37459800-37460600	Enhancers	Spleen	Spleen
13	chr2:37459800-37460800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:37459800-37461600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr2:37459800-37461600	Weak transcription	Aorta	Aorta
16	chr2:37459800-37465000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:37460000-37460600	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
18	chr2:37460000-37460600	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr2:37460000-37460600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:37460000-37460600	Enhancers	Fetal Brain Male	brain
21	chr2:37460000-37460600	Enhancers	Right Atrium	heart
22	chr2:37460000-37461000	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr2:37460000-37461200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:37460000-37463200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:37460000-37463400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:37460000-37468200	Weak transcription	Psoas Muscle	Psoas
27	chr2:37460000-37468600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr2:37460000-37471200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr2:37460000-37474000	Weak transcription	Colonic Mucosa	Colon
30	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
31	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:37460200-37460600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:37460200-37460600	Enhancers	Brain Cingulate Gyrus	brain
34	chr2:37460200-37461200	Weak transcription	Fetal Intestine Small	intestine
35	chr2:37460200-37461200	Weak transcription	Fetal Stomach	stomach
36	chr2:37460200-37461400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr2:37460200-37461800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr2:37460200-37462000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr2:37460200-37462600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr2:37460200-37463800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr2:37460200-37464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:37460200-37464600	Weak transcription	NHLF	lung
43	chr2:37460200-37465200	Weak transcription	Primary B cells from cord blood	blood
44	chr2:37460200-37466600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr2:37460200-37468400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr2:37460200-37468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
48	chr2:37460400-37460600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr2:37460400-37460600	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr2:37460400-37460600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell

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