Variant report

Variant	rs2430494
Chromosome Location	chr2:37463620-37463621
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37455061..37456837-chr2:37463008..37464673,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10177970	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10178975	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs10779921	0.80[CEU][hapmap]
rs11124575	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs12611683	0.83[EUR][1000 genomes]
rs12712530	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409250	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410628	1.00[CHB][hapmap]
rs17332720	1.00[CHB][hapmap]
rs17498637	1.00[CHB][hapmap]
rs17505250	1.00[CHB][hapmap]
rs1861444	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041837	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041840	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2110962	0.90[EUR][1000 genomes]
rs2110964	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2160391	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2160392	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2160393	0.89[EUR][1000 genomes]
rs2160395	1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249965	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2372888	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372990	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2465488	0.82[EUR][1000 genomes]
rs2540972	0.83[EUR][1000 genomes]
rs2540973	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2540975	0.88[YRI][hapmap]
rs2540977	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2714470	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770768	1.00[CHB][hapmap]
rs3902740	1.00[CHB][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648186	1.00[CHB][hapmap]
rs4670678	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670687	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs4670691	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6544065	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6544067	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6730503	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6742641	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7579990	0.91[EUR][1000 genomes]
rs7593932	0.84[CEU][hapmap]
rs759461	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7601628	0.93[EUR][1000 genomes]
rs7602924	0.90[EUR][1000 genomes]
rs8243	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2430494	PRKD3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37459800-37465000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:37460000-37468200	Weak transcription	Psoas Muscle	Psoas
3	chr2:37460000-37468600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:37460000-37471200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:37460000-37474000	Weak transcription	Colonic Mucosa	Colon
6	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
7	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:37460200-37463800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:37460200-37464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:37460200-37464600	Weak transcription	NHLF	lung
11	chr2:37460200-37465200	Weak transcription	Primary B cells from cord blood	blood
12	chr2:37460200-37466600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:37460200-37468400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:37460200-37468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
16	chr2:37460400-37464000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr2:37460400-37464000	Weak transcription	Primary T cells from cord blood	blood
18	chr2:37460400-37464000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr2:37460400-37464400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:37460400-37464400	Weak transcription	Adipose Nuclei	Adipose
21	chr2:37460400-37464400	Weak transcription	Liver	Liver
22	chr2:37460400-37464400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr2:37460400-37464400	Weak transcription	Osteobl	bone
24	chr2:37460400-37464600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:37460400-37464600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:37460400-37464600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:37460400-37464600	Weak transcription	Brain Anterior Caudate	brain
28	chr2:37460400-37464600	Weak transcription	Fetal Lung	lung
29	chr2:37460400-37464600	Weak transcription	Placenta	Placenta
30	chr2:37460400-37464600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:37460400-37464600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:37460400-37464800	Weak transcription	Fetal Intestine Large	intestine
33	chr2:37460400-37465200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:37460400-37465200	Weak transcription	Fetal Brain Female	brain
35	chr2:37460400-37465400	Weak transcription	Lung	lung
36	chr2:37460400-37465600	Weak transcription	Left Ventricle	heart
37	chr2:37460400-37465800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr2:37460400-37466000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr2:37460400-37466200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr2:37460400-37466200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr2:37460400-37467200	Weak transcription	Esophagus	oesophagus
42	chr2:37460400-37467200	Weak transcription	Pancreas	Pancrea
43	chr2:37460400-37467400	Weak transcription	NHDF-Ad	bronchial
44	chr2:37460400-37468000	Weak transcription	HUVEC	blood vessel
45	chr2:37460400-37468400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr2:37460400-37468400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr2:37460400-37468400	Weak transcription	NH-A	brain
48	chr2:37460400-37468600	Weak transcription	Brain Angular Gyrus	brain
49	chr2:37460400-37468600	Weak transcription	Brain Germinal Matrix	brain
50	chr2:37460400-37468800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links