Variant report

Variant	rs10779921
Chromosome Location	chr2:37440355-37440356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37438602..37441837-chr2:37456700..37460160,3	K562	blood:
2	chr2:37423528..37425114-chr2:37439961..37442863,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138068	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000115816	Chromatin interaction
ENSG00000003509	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10177970	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs10178975	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs11124575	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs12712530	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs13022403	1.00[JPT][hapmap]
rs1861444	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs2041837	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs2041840	1.00[JPT][hapmap]
rs2110965	0.88[CEU][hapmap]
rs2160391	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2249965	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs2300880	1.00[JPT][hapmap]
rs2372888	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs2430494	0.80[CEU][hapmap]
rs2465488	0.93[ASN][1000 genomes]
rs2540972	1.00[ASN][1000 genomes]
rs2540973	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2540975	1.00[JPT][hapmap]
rs2540977	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs3770768	1.00[JPT][hapmap]
rs3845783	1.00[JPT][hapmap]
rs3845785	1.00[JPT][hapmap]
rs4648186	1.00[JPT][hapmap]
rs4670193	1.00[JPT][hapmap]
rs4670671	1.00[JPT][hapmap]
rs4670678	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs4670686	1.00[JPT][hapmap]
rs4670687	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs6544067	1.00[JPT][hapmap]
rs6730503	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs7583355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7605677	1.00[JPT][hapmap]
rs8243	0.84[CEU][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10779921	CEBPZ	cis	Esophagus Muscularis	GTEx
rs10779921	AC007390.5	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37424400-37446400	Weak transcription	Small Intestine	intestine
2	chr2:37425000-37444200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:37426600-37451400	Strong transcription	Fetal Thymus	thymus
4	chr2:37427200-37441200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:37427800-37451400	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr2:37429000-37449200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:37429400-37449000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr2:37429800-37452600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:37431200-37441200	Strong transcription	Adipose Nuclei	Adipose
10	chr2:37431200-37442400	Strong transcription	Muscle Satellite Cultured Cells	--
11	chr2:37431200-37450600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:37431200-37450600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:37431200-37452400	Strong transcription	Dnd41	blood
14	chr2:37431400-37450800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:37432400-37444600	Strong transcription	Placenta Amnion	Placenta Amnion
16	chr2:37432800-37440400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:37433000-37451600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:37433200-37450600	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr2:37433800-37440600	Weak transcription	Lung	lung
20	chr2:37433800-37442200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr2:37433800-37444200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:37433800-37445800	Strong transcription	Placenta	Placenta
23	chr2:37433800-37447800	Weak transcription	Aorta	Aorta
24	chr2:37433800-37447800	Weak transcription	Gastric	stomach
25	chr2:37433800-37448000	Weak transcription	Pancreas	Pancrea
26	chr2:37433800-37453600	Weak transcription	Spleen	Spleen
27	chr2:37434000-37447600	Weak transcription	Right Ventricle	heart
28	chr2:37434200-37452400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr2:37435400-37442600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:37435600-37441000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr2:37435600-37442800	Strong transcription	HUVEC	blood vessel
32	chr2:37435600-37444800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr2:37435600-37444800	Strong transcription	Colon Smooth Muscle	Colon
34	chr2:37436000-37440800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr2:37436000-37443600	Strong transcription	NHDF-Ad	bronchial
36	chr2:37436000-37444000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
37	chr2:37436200-37441000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr2:37436200-37441000	Strong transcription	Left Ventricle	heart
39	chr2:37436400-37442400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr2:37436400-37442600	Strong transcription	Osteobl	bone
41	chr2:37436400-37444800	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr2:37436400-37446800	Strong transcription	K562	blood
43	chr2:37436600-37441000	Strong transcription	Brain Hippocampus Middle	brain
44	chr2:37436600-37441200	Strong transcription	Fetal Muscle Leg	muscle
45	chr2:37436600-37443200	Weak transcription	HSMMtube	muscle
46	chr2:37436600-37444800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr2:37436600-37444800	Strong transcription	NH-A	brain
48	chr2:37436600-37450000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:37436600-37451400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr2:37436800-37441000	Strong transcription	H9 Cell Line	embryonic stem cell

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