Variant report
| Variant | rs3845783 |
|---|---|
| Chromosome Location | chr2:37402024-37402025 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10177970 | 1.00[JPT][hapmap] |
| rs10178975 | 1.00[JPT][hapmap] |
| rs10779921 | 1.00[JPT][hapmap] |
| rs11124566 | 0.82[CEU][hapmap] |
| rs11124575 | 1.00[JPT][hapmap] |
| rs12712530 | 1.00[JPT][hapmap] |
| rs13022403 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs13410628 | 1.00[JPT][hapmap] |
| rs1861444 | 1.00[JPT][hapmap] |
| rs2041837 | 1.00[JPT][hapmap] |
| rs2041840 | 1.00[JPT][hapmap] |
| rs2160391 | 1.00[JPT][hapmap] |
| rs2249965 | 1.00[JPT][hapmap] |
| rs2300880 | 1.00[JPT][hapmap] |
| rs2372888 | 1.00[JPT][hapmap] |
| rs2540973 | 1.00[JPT][hapmap] |
| rs2540975 | 1.00[JPT][hapmap] |
| rs2540977 | 1.00[JPT][hapmap] |
| rs3770768 | 1.00[JPT][hapmap] |
| rs3845785 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap] |
| rs3845786 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4648186 | 1.00[JPT][hapmap] |
| rs4670193 | 1.00[JPT][hapmap] |
| rs4670670 | 0.89[ASN][1000 genomes] |
| rs4670671 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4670674 | 0.81[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4670678 | 1.00[JPT][hapmap] |
| rs4670686 | 1.00[JPT][hapmap] |
| rs4670687 | 1.00[JPT][hapmap] |
| rs6544067 | 1.00[JPT][hapmap] |
| rs6706672 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6710046 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6730503 | 1.00[JPT][hapmap] |
| rs6734866 | 0.94[ASN][1000 genomes] |
| rs6748151 | 0.81[AMR][1000 genomes] |
| rs7583355 | 0.95[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap] |
| rs7605677 | 1.00[JPT][hapmap] |
| rs8243 | 1.00[JPT][hapmap] |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs3845783 | QPCT | cis | parietal | SCAN |
| rs3845783 | CDC42EP3 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
