Variant report
| Variant | rs4670671 |
|---|---|
| Chromosome Location | chr2:37396504-37396505 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000003509 | Chromatin interaction |
| ENSG00000115816 | Chromatin interaction |
| ENSG00000055332 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10177970 | 1.00[JPT][hapmap] |
| rs10178975 | 1.00[JPT][hapmap] |
| rs10779921 | 1.00[JPT][hapmap] |
| rs11124575 | 1.00[JPT][hapmap] |
| rs12712530 | 1.00[JPT][hapmap] |
| rs13022403 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs13410628 | 1.00[JPT][hapmap] |
| rs1861444 | 1.00[JPT][hapmap] |
| rs2041837 | 1.00[JPT][hapmap] |
| rs2041840 | 1.00[JPT][hapmap] |
| rs2160391 | 1.00[JPT][hapmap] |
| rs2249965 | 1.00[JPT][hapmap] |
| rs2300880 | 1.00[JPT][hapmap] |
| rs2372888 | 1.00[JPT][hapmap] |
| rs2540973 | 1.00[JPT][hapmap] |
| rs2540975 | 1.00[JPT][hapmap] |
| rs2540977 | 1.00[JPT][hapmap] |
| rs3770768 | 1.00[JPT][hapmap] |
| rs3845783 | 1.00[JPT][hapmap] |
| rs3845785 | 1.00[JPT][hapmap] |
| rs3845786 | 0.83[ASN][1000 genomes] |
| rs4648186 | 1.00[JPT][hapmap] |
| rs4670193 | 1.00[JPT][hapmap] |
| rs4670670 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4670678 | 1.00[JPT][hapmap] |
| rs4670686 | 1.00[JPT][hapmap] |
| rs4670687 | 1.00[JPT][hapmap] |
| rs6544067 | 1.00[JPT][hapmap] |
| rs6706672 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6710046 | 0.89[ASN][1000 genomes] |
| rs6730503 | 1.00[JPT][hapmap] |
| rs6734866 | 0.83[ASN][1000 genomes] |
| rs6748151 | 0.90[ASN][1000 genomes] |
| rs7583355 | 1.00[JPT][hapmap] |
| rs7605677 | 1.00[JPT][hapmap] |
| rs8243 | 1.00[JPT][hapmap] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4670671 | QPCT | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:37395600-37398400 | Weak transcription | Stomach Mucosa | stomach |
| 2 | chr2:37395600-37398400 | Weak transcription | HepG2 | liver |
