Variant report

Variant	rs2540975
Chromosome Location	chr2:37419985-37419986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37193543..37195604-chr2:37419400..37421969,2	K562	blood:
2	chr2:37417209..37421178-chr2:37422730..37425028,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218739	Chromatin interaction
ENSG00000138068	Chromatin interaction
ENSG00000115808	Chromatin interaction

rs_ID	r²[population]
rs10177970	1.00[JPT][hapmap]
rs10178975	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs10779921	1.00[JPT][hapmap]
rs11124575	1.00[JPT][hapmap]
rs12712530	1.00[JPT][hapmap]
rs13022403	1.00[JPT][hapmap]
rs13410628	1.00[JPT][hapmap]
rs1861444	1.00[JPT][hapmap]
rs2041837	1.00[JPT][hapmap]
rs2041840	0.81[GIH][hapmap];1.00[JPT][hapmap]
rs2098386	0.83[CEU][hapmap]
rs2160391	1.00[JPT][hapmap]
rs2249965	1.00[JPT][hapmap]
rs2300880	1.00[JPT][hapmap]
rs2372888	1.00[JPT][hapmap]
rs2430494	0.88[YRI][hapmap]
rs2540973	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs2540977	1.00[JPT][hapmap]
rs3770768	1.00[JPT][hapmap]
rs3845783	1.00[JPT][hapmap]
rs3845785	1.00[JPT][hapmap]
rs4648186	1.00[JPT][hapmap]
rs4670193	1.00[JPT][hapmap]
rs4670671	1.00[JPT][hapmap]
rs4670678	1.00[JPT][hapmap]
rs4670686	1.00[JPT][hapmap]
rs4670687	1.00[JPT][hapmap]
rs6544067	1.00[JPT][hapmap]
rs6730503	0.86[GIH][hapmap];1.00[JPT][hapmap]
rs7583355	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7605677	1.00[JPT][hapmap]
rs8243	1.00[JPT][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs2540975	PRKD3	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37416200-37420200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr2:37416200-37420400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:37416400-37420400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:37416600-37420200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr2:37416600-37420200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:37416600-37420400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:37416800-37420200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:37416800-37423200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:37417000-37420200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr2:37417200-37423200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:37417200-37423200	Weak transcription	Pancreas	Pancrea
12	chr2:37417400-37423200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr2:37417400-37423200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:37417800-37423200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:37417800-37423200	Weak transcription	NH-A	brain
16	chr2:37418000-37423200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:37418000-37423200	Weak transcription	A549	lung
18	chr2:37418000-37423200	Weak transcription	Hela-S3	cervix
19	chr2:37418000-37423200	Weak transcription	HMEC	breast
20	chr2:37418000-37423400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:37418200-37423400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:37418200-37423400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:37418400-37423200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr2:37418400-37423200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr2:37418400-37423200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr2:37418600-37427200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:37418800-37422400	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr2:37419200-37420000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:37419200-37421000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr2:37419200-37423000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:37419200-37423200	Weak transcription	Esophagus	oesophagus
32	chr2:37419200-37423200	Weak transcription	Spleen	Spleen
33	chr2:37419200-37423400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr2:37419200-37423600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:37419200-37423600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr2:37419400-37423200	Weak transcription	Primary B cells from cord blood	blood
37	chr2:37419800-37420200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr2:37419800-37420200	Enhancers	HepG2	liver
39	chr2:37419800-37420400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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