Variant report

Variant	rs6544067
Chromosome Location	chr2:37556266-37556267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37545726..37548175-chr2:37554305..37557162,2	K562	blood:
2	chr2:37543073..37544935-chr2:37554432..37557348,2	K562	blood:
3	chr2:37549953..37551637-chr2:37554820..37556399,2	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10177970	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10178975	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10779921	1.00[JPT][hapmap]
rs11124575	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12712530	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13022403	1.00[JPT][hapmap]
rs13409250	0.81[ASN][1000 genomes]
rs13410628	1.00[CHB][hapmap]
rs1861444	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2041837	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2041840	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2110962	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2110964	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2160391	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs2160392	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2160393	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2160395	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2249965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2300880	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2372888	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2372990	0.81[ASN][1000 genomes]
rs2372992	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2430494	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2540973	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs2540975	1.00[JPT][hapmap]
rs2540977	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2714470	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3845783	1.00[JPT][hapmap]
rs3845785	1.00[JPT][hapmap]
rs3902740	1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4648186	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4670193	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4670671	1.00[JPT][hapmap]
rs4670678	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4670686	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4670687	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4670690	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670691	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6544065	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6730503	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6737188	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6742641	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583355	1.00[JPT][hapmap]
rs7593932	0.84[CEU][hapmap]
rs759461	1.00[CHB][hapmap]
rs7605677	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8243	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37553800-37562200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:37554000-37557800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr2:37555200-37557400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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