Variant report

Variant	rs3845785
Chromosome Location	chr2:37402955-37402956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37402555..37406062-chr2:37411468..37414778,3	K562	blood:
2	chr2:37402760..37404776-chr2:37408540..37411401,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10177970	1.00[JPT][hapmap]
rs10178975	1.00[JPT][hapmap]
rs10779921	1.00[JPT][hapmap]
rs11124575	1.00[JPT][hapmap]
rs12712530	1.00[JPT][hapmap]
rs13022403	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13410628	1.00[JPT][hapmap]
rs1861444	1.00[JPT][hapmap]
rs2041837	1.00[JPT][hapmap]
rs2041840	1.00[JPT][hapmap]
rs2160391	1.00[JPT][hapmap]
rs2249965	1.00[JPT][hapmap]
rs2300880	1.00[JPT][hapmap]
rs2372888	1.00[JPT][hapmap]
rs2540973	1.00[JPT][hapmap]
rs2540975	1.00[JPT][hapmap]
rs2540977	1.00[JPT][hapmap]
rs3770768	1.00[JPT][hapmap]
rs3845783	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs3845786	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4648186	1.00[JPT][hapmap]
rs4670193	1.00[JPT][hapmap]
rs4670670	0.89[ASN][1000 genomes]
rs4670671	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4670674	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4670678	1.00[JPT][hapmap]
rs4670686	1.00[JPT][hapmap]
rs4670687	1.00[JPT][hapmap]
rs6544059	0.81[EUR][1000 genomes]
rs6544067	1.00[JPT][hapmap]
rs6706672	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6710046	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6730503	1.00[JPT][hapmap]
rs6734866	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6748151	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7583355	0.90[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7605677	1.00[JPT][hapmap]
rs8243	1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3845785	QPCT	cis	parietal	SCAN
rs3845785	CDC42EP3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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