Variant report

Variant	rs760314
Chromosome Location	chr3:60727958-60727959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12631593	1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs17627738	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs73103506	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs760314	CDRT1	trans	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60724400-60728800	Weak transcription	HepG2	liver
2	chr3:60725200-60737200	Weak transcription	Pancreas	Pancrea
3	chr3:60725800-60730200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:60726800-60728600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
5	chr3:60727000-60730400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:60727000-60730600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:60727200-60729800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:60727200-60729800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:60727400-60728400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:60727400-60728600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:60727600-60729200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:60727600-60730600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:60727800-60729200	Enhancers	HSMMtube	muscle
14	chr3:60727800-60729600	Enhancers	Osteobl	bone
15	chr3:60727800-60730000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:60727800-60730000	Enhancers	NH-A	brain
17	chr3:60727800-60730400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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