Variant report

Variant	rs7606784
Chromosome Location	chr2:173012990-173012991
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10930516	0.81[ASN][1000 genomes]
rs11890561	0.81[ASN][1000 genomes]
rs1386354	0.81[ASN][1000 genomes]
rs73022564	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528818	chr2:173001058-173013373	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173012600-173013000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:173012600-173013000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:173012600-173013200	Enhancers	Fetal Thymus	thymus
4	chr2:173012600-173013400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:173012600-173013600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:173012800-173013000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:173012800-173013000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:173012800-173013000	Bivalent Enhancer	NHDF-Ad	bronchial
9	chr2:173012800-173013200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:173012800-173013400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:173012800-173013400	Bivalent/Poised TSS	Osteobl	bone
12	chr2:173012800-173013600	Enhancers	Brain Germinal Matrix	brain
13	chr2:173012800-173013600	Enhancers	HMEC	breast
14	chr2:173012800-173013600	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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