Variant report

Variant	rs11890561
Chromosome Location	chr2:173010851-173010852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10930516	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675271	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11675320	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11675761	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11681688	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1319695	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1386354	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16860015	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2357316	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2357317	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4972429	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6433332	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6708019	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6724614	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6735574	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6748154	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6748291	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73020553	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73022510	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73022564	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566889	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7569224	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7583008	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7590382	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7590626	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7590815	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7593498	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7606784	0.81[ASN][1000 genomes]
rs972957	0.88[EUR][1000 genomes]
rs991484	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528818	chr2:173001058-173013373	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173002200-173012600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173006600-173012600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:173009200-173012800	Weak transcription	Brain Germinal Matrix	brain
4	chr2:173010400-173011000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:173010600-173011000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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