Variant report

Variant	rs7610578
Chromosome Location	chr3:98970482-98970483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13074381	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13318275	1.00[EUR][1000 genomes]
rs1402269	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1474207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1851064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1879376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1879377	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2341805	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2341806	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28738836	1.00[EUR][1000 genomes]
rs6804198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934730	1.00[EUR][1000 genomes]
rs73859814	1.00[EUR][1000 genomes]
rs7612730	1.00[EUR][1000 genomes]
rs7630458	1.00[EUR][1000 genomes]
rs939446	1.00[EUR][1000 genomes]
rs9830015	1.00[EUR][1000 genomes]
rs9836634	1.00[EUR][1000 genomes]
rs9857240	1.00[EUR][1000 genomes]
rs9874838	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1798220	chr3:98894142-99020463	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1013972	chr3:98944446-98998206	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv999173	chr3:98944446-99007686	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002786	chr3:98944446-99013936	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98964800-98971400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:98969000-98970600	Enhancers	Osteobl	bone
3	chr3:98969400-98970600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:98969400-98977200	Weak transcription	HSMMtube	muscle
5	chr3:98970000-98971200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:98970200-98972200	Weak transcription	NHDF-Ad	bronchial
7	chr3:98970200-98972400	Weak transcription	Fetal Lung	lung
8	chr3:98970200-98975000	Weak transcription	HMEC	breast
9	chr3:98970200-98988400	Weak transcription	Aorta	Aorta
10	chr3:98970200-98988800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:98970400-98970600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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