Variant report

Variant	rs7610760
Chromosome Location	chr3:110886586-110886587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11929280	0.85[CEU][hapmap]
rs13093206	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1477841	1.00[CEU][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1477842	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1477843	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs1477846	1.00[CEU][hapmap]
rs1477847	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs1477848	1.00[CEU][hapmap]
rs1477851	0.86[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2126713	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs2169643	0.85[CEU][hapmap]
rs2399373	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs2399375	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4682033	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4682034	0.85[AFR][1000 genomes]
rs4682229	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs4682230	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs4682231	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs4682234	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4682238	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55774570	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56668317	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57417964	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6437948	1.00[CEU][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6437952	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6437953	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6437955	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs66803420	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67209183	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6794645	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7430600	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7433877	0.85[CEU][hapmap]
rs7612667	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs7623847	0.85[AFR][1000 genomes]
rs7623880	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7653595	1.00[CEU][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs873132	0.85[CEU][hapmap]
rs9288918	0.85[CEU][hapmap]
rs9821335	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9828899	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs9866028	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9876350	1.00[CEU][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv963503	chr3:110882589-110888339	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110816000-110893400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:110829400-110893400	Weak transcription	HUVEC	blood vessel
3	chr3:110832200-110892400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:110832400-110911200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:110834000-110891800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:110835600-110929600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:110842600-110911200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:110847000-110911400	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:110848200-110891800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:110853000-110919600	Weak transcription	Fetal Brain Male	brain
11	chr3:110853200-110897000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:110853200-110911000	Weak transcription	NH-A	brain
13	chr3:110857800-110892000	Weak transcription	Adipose Nuclei	Adipose
14	chr3:110864200-110891800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:110869400-110929000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:110870200-110891800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:110871000-110914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:110871200-110896400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:110871600-110889600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:110871600-110892200	Weak transcription	NHLF	lung
21	chr3:110872000-110889800	Weak transcription	Pancreas	Pancrea
22	chr3:110872200-110913800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr3:110872600-110918800	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:110872800-110893400	Weak transcription	Gastric	stomach
25	chr3:110872800-110896000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:110873800-110889400	Weak transcription	Aorta	Aorta
27	chr3:110874200-110893400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:110874200-110893400	Weak transcription	Fetal Intestine Small	intestine
29	chr3:110874200-110894200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:110874200-110912000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:110874400-110911800	Weak transcription	Left Ventricle	heart
32	chr3:110874800-110889000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:110874800-110891600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr3:110874800-110913000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:110875000-110889400	Weak transcription	Liver	Liver
36	chr3:110875000-110891600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:110875200-110897600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:110877800-110891600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr3:110878800-110888400	Weak transcription	NHDF-Ad	bronchial
40	chr3:110880600-110889600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:110880600-110892000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:110880600-110903600	Weak transcription	Fetal Kidney	kidney
43	chr3:110880800-110889000	Weak transcription	Dnd41	blood
44	chr3:110880800-110890800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr3:110880800-110892800	Weak transcription	Fetal Stomach	stomach
46	chr3:110881000-110889800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:110881000-110891800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:110881000-110891800	Weak transcription	HSMMtube	muscle
49	chr3:110881000-110892400	Weak transcription	A549	lung
50	chr3:110881000-110928000	Weak transcription	Osteobl	bone

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