Variant report

Variant	rs9288918
Chromosome Location	chr3:110814079-110814080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11929280	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1351049	0.88[ASN][1000 genomes]
rs1381836	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap]
rs1382077	0.88[ASN][1000 genomes]
rs1477841	0.85[CEU][hapmap]
rs1477842	0.85[CEU][hapmap]
rs1477843	0.85[CEU][hapmap]
rs1477846	0.84[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs1477847	0.85[CEU][hapmap]
rs1477848	0.84[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1477850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes]
rs16857350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap]
rs16857689	0.88[ASN][1000 genomes]
rs2126713	0.85[CEU][hapmap]
rs2126714	1.00[ASN][1000 genomes]
rs2169643	0.89[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs2399373	0.85[CEU][hapmap]
rs2399375	0.85[CEU][hapmap]
rs2399376	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs35441599	0.81[AFR][1000 genomes]
rs4682229	0.85[CEU][hapmap]
rs4682230	0.85[CEU][hapmap]
rs4682231	0.85[CEU][hapmap]
rs4682234	0.85[CEU][hapmap]
rs4682238	0.85[CEU][hapmap]
rs57043424	0.92[ASN][1000 genomes]
rs58184851	0.88[ASN][1000 genomes]
rs60585479	0.92[ASN][1000 genomes]
rs6437948	0.85[CEU][hapmap]
rs6437953	0.85[CEU][hapmap]
rs66624862	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6794645	0.85[CEU][hapmap]
rs72935952	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72935959	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72935966	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72935968	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72935975	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72935989	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72935999	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937905	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937910	0.88[ASN][1000 genomes]
rs72937915	0.88[ASN][1000 genomes]
rs72937922	0.88[ASN][1000 genomes]
rs72937952	0.92[ASN][1000 genomes]
rs72937960	0.92[ASN][1000 genomes]
rs72937968	0.92[ASN][1000 genomes]
rs72937972	0.92[ASN][1000 genomes]
rs7430600	0.85[CEU][hapmap]
rs7433877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7610760	0.85[CEU][hapmap]
rs7612667	0.85[CEU][hapmap]
rs7620372	0.82[CEU][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs7623880	0.85[CEU][hapmap]
rs7648752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653595	0.85[CEU][hapmap]
rs873132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs873133	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9288919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap]
rs9821335	0.85[CEU][hapmap]
rs9828899	0.85[CEU][hapmap]
rs9853370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9866028	0.85[CEU][hapmap]
rs9876350	0.85[CEU][hapmap]
rs9882945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110799800-110820600	Weak transcription	A549	lung
2	chr3:110800200-110817200	Weak transcription	Gastric	stomach
3	chr3:110802000-110822600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:110804000-110817200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:110804200-110814200	Weak transcription	Fetal Intestine Large	intestine
6	chr3:110805000-110833600	Weak transcription	NHDF-Ad	bronchial
7	chr3:110807000-110815400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:110807200-110814600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:110807200-110815400	Weak transcription	Psoas Muscle	Psoas
10	chr3:110807200-110822600	Weak transcription	Fetal Lung	lung
11	chr3:110807400-110815200	Weak transcription	Fetal Heart	heart
12	chr3:110808600-110817200	Weak transcription	Small Intestine	intestine
13	chr3:110810400-110816400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:110812400-110815800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:110812600-110815200	ZNF genes & repeats	Dnd41	blood
16	chr3:110813000-110816200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr3:110813200-110814200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:110813200-110814200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr3:110813200-110814200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:110813200-110816000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
21	chr3:110813400-110814200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
22	chr3:110813400-110814400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:110813400-110816000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chr3:110813800-110815400	Weak transcription	Ovary	ovary
25	chr3:110813800-110817200	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:110813800-110822600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:110814000-110816800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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