Variant report

Variant	rs66624862
Chromosome Location	chr3:110765215-110765216
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511291	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1462299	0.82[EUR][1000 genomes]
rs1477846	0.83[ASN][1000 genomes]
rs1477848	0.83[ASN][1000 genomes]
rs16857350	0.82[EUR][1000 genomes]
rs16857536	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2126714	0.87[ASN][1000 genomes]
rs60037602	0.82[EUR][1000 genomes]
rs72934030	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72934034	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72934100	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935934	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72935952	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935959	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935966	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935968	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935989	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935999	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72937905	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72948740	0.82[EUR][1000 genomes]
rs72948795	0.82[EUR][1000 genomes]
rs72948800	0.82[EUR][1000 genomes]
rs7433877	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7648752	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs873132	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs873133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9288918	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9288919	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9853370	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv829674	chr3:110616256-110771049	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110760400-110765800	Weak transcription	HepG2	liver
2	chr3:110763800-110768600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:110764000-110767400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:110764000-110769000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:110764400-110765400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:110764400-110765800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr3:110764400-110767200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:110764400-110767400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:110764400-110767800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:110764400-110768800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:110764400-110768800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:110764600-110765600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:110764600-110766200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:110765000-110765800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:110765000-110788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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